SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
TTACTTCCGGTTATACCTGGGGAATTAA
1._RUQ_6
_______AC___AA__
2._EET_272_[ECU]
_______AC___AA__
3._EET_272_[ECU]
_______AC___AA__
4._EET_272_[ECU]
_______AC___AA__
5._EET_272_[ECU]
_______AC___AA__
6._EET_272_[ECU]
_______AC___AA__
7._EET_272_[ECU]
_______AC___AA__
8._EET_272_[ECU]
_______AC___AA__
9._EET_272_[ECU]
_______AC___AA__
10._EET_272_[ECU]
_______AC___AA__
11._GC-03-032-3-11
_______AC___AA__
12._GC-03-032-3-11
_______AC___AA__
13._GC-03-032-3-11
_______AC___AA__
14._GC-03-032-3-11
_______AC___AA__
15._GC-03-032-3-11
_______AC___AA__
16._GC-03-032-3-11
_______AC___AA__
17._GC-03-032-3-11
_______AC___AA__
18._GC-03-032-3-11
_______AC___AA__
19._EET_272_[ECU]
_______CC___AG__
20._EET_272_[ECU]
_______CC___AG__
21._RUQ_6
_______AC___AA__
22._MITC-000381
_______AC___AA__
23._GC-03-032-3-11
_______CC___AG__
24._GC-03-032-3-11
_______CC___AG__
25._GC-03-32-3-11
_______CC___AG__
 1516171819202122232425262728
_Input profile
AGACCCAACCACAGGGTTCCTTAACCAA
1._RUQ_6
AG____CC_GG_CC____
2._EET_272_[ECU]
_____CC_GG_____AA
3._EET_272_[ECU]
_____CC_GG_____AA
4._EET_272_[ECU]
_____CC_GG_____AA
5._EET_272_[ECU]
_____CC_GG_____AA
6._EET_272_[ECU]
_____CC_GG_____AA
7._EET_272_[ECU]
_____CC_GG_____AA
8._EET_272_[ECU]
_____CC_GG_____AA
9._EET_272_[ECU]
_____CC_GG_____AA
10._EET_272_[ECU]
_____________AA
11._GC-03-032-3-11
AG____CC_GG_CC___AA
12._GC-03-032-3-11
AG____CC_GG_CC___AA
13._GC-03-032-3-11
AG____CC_GG_CC___AA
14._GC-03-032-3-11
AG____CC_GG_CC___AA
15._GC-03-032-3-11
AG____CC_GG_CC___AA
16._GC-03-032-3-11
AG____CC_GG_CC___AA
17._GC-03-032-3-11
AG____CC_GG_CC___AA
18._GC-03-032-3-11
AG____CC_GG_CC___AA
19._EET_272_[ECU]
_____AC_CG_____AG
20._EET_272_[ECU]
_____AC_CG_____AG
21._RUQ_6
AG____CC_GG_GG____
22._MITC-000381
AG____CC_GG_GG____
23._GC-03-032-3-11
GG____AC_CG_CT___AG
24._GC-03-032-3-11
GG____AC_CG_CT___AG
25._GC-03-32-3-11
GG____AC_CG_AG____
 2930313233343536373839404142
_Input profile
CCTTGGGGTTTTACATTTCCGGCGAGCT
1._RUQ_6
_TTGGGG__AC__CC-_AG-
2._EET_272_[ECU]
__GG______CC__AG_
3._EET_272_[ECU]
__GG______CC__AG_
4._EET_272_[ECU]
__GG______CC__AG_
5._EET_272_[ECU]
__GG______CC__AG_
6._EET_272_[ECU]
__GG______CC__AG_
7._EET_272_[ECU]
__GG______CC__AG_
8._EET_272_[ECU]
__GG______CC__AG_
9._EET_272_[ECU]
__GG______CC__AG_
10._EET_272_[ECU]
__GG_________AG_
11._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
12._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
13._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
14._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
15._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
16._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
17._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
18._GC-03-032-3-11
_CCGGGG__AC_GGCCGG_AGCT
19._EET_272_[ECU]
__GG______GG__AG_
20._EET_272_[ECU]
__GG______GG__AG_
21._RUQ_6
__CCGG__AC_CCGGGG_AG_
22._MITC-000381
__CCGG__AC_CCGGGG_AG_
23._GC-03-032-3-11
_CTGGAG__AA_CGGGGG_AGCC
24._GC-03-032-3-11
_CTGGAG__AA_CGGGGG_AGCC
25._GC-03-32-3-11
__CCAG__AA_CGCCGG_AG_
 4344454647484950515253545556
_Input profile
CTAACCGGCCCCGTAACCTTGGATGGGG
1._RUQ_6
_________TT____
2._EET_272_[ECU]
___GG_CC___TT____
3._EET_272_[ECU]
___GG_CC___TT____
4._EET_272_[ECU]
___GG_CC___TT____
5._EET_272_[ECU]
___GG_CC___TT____
6._EET_272_[ECU]
___GG_CC___TT____
7._EET_272_[ECU]
___GG_CC___TT____
8._EET_272_[ECU]
___GG_CC___TT____
9._EET_272_[ECU]
___GG_CC___TT____
10._EET_272_[ECU]
_____CT___TT____
11._GC-03-032-3-11
___GG_CC___TT____
12._GC-03-032-3-11
___GG_CC___TT____
13._GC-03-032-3-11
___GG_CC___TT____
14._GC-03-032-3-11
___GG_CC___TT____
15._GC-03-032-3-11
___GG_CC___TT____
16._GC-03-032-3-11
___GG_CC___TT____
17._GC-03-032-3-11
___GG_CC___TT____
18._GC-03-032-3-11
___GG_CC___TT____
19._EET_272_[ECU]
___AG_CC___TT____
20._EET_272_[ECU]
___AG_CC___TT____
21._RUQ_6
___GG_____AA____
22._MITC-000381
___GG_____AA____
23._GC-03-032-3-11
___AG_CC___TT____
24._GC-03-032-3-11
___AG_CC___TT____
25._GC-03-32-3-11
___AG_____AA____
 575859           
_Input profile
CCCTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_6
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
___X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-032-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._EET_272_[ECU]
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._EET_272_[ECU]
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_6
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._MITC-000381
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-032-3-11
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-032-3-11
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-32-3-11
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] RUQ_6

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._EET_272_[ECU] RUQ_6

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

3._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

5._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

6._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

8._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

10._EET_272_[ECU]

92.9 %
7 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

11._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

17._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._EET_272_[ECU]

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._EET_272_[ECU]

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

21._EET_272_[ECU] RUQ_6

59.4 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._EET_272_[ECU] MITC-000381

59.4 %
16 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

57.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

53.1 %
16 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP602 25TcSNP640
26TcSNP642 27TcSNP644 28TcSNP645 29TcSNP660 30TcSNP702
31TcSNP723 32TcSNP731 33TcSNP739 34TcSNP800 35TcSNP823
36TcSNP835 37TcSNP836 38TcSNP872 39TcSNP899 40TcSNP945
41TcSNP998 42TcSNP999 43TcSNP1010 44TcSNP1019 45TcSNP1053
46TcSNP1062 47TcSNP1112 48TcSNP1144 49TcSNP1205 50TcSNP1230
51TcSNP1237 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527